PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G085400.1
Common NamePHAVU_002G085400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 265aa    MW: 29329.4 Da    PI: 8.8279
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G085400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.22.9e-314097359
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                         v YkeClkNhAas+Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFH r++++
  Phvul.002G085400.1 40 VVCYKECLKNHAASIGGHALDGCGEFMPSSSSNpTEPRSLTCAACGCHRNFHHRDTQQ 97
                        689**************************99999*******************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-274195IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5944394IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1943102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-294394IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.07E-19161234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-30167234IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDLTNNANTT HANPQTPQHP TTKRHRPTTA PPPSQPPSAV VCYKECLKNH AASIGGHALD  60
GCGEFMPSSS SNPTEPRSLT CAACGCHRNF HHRDTQQYHS NPRPNFISFY HSPPPPHHGP  120
GLCTSPSPSP LSSPSPPPLS HHFPGRRPVL GLFGPGNEHH HTSFHLSESP SGKKRFRTKF  180
SQEQKEKMQN FSEKLGWRMQ KGDEGLVQDF CNEIGVSRGV FKVWMHNNKN TCRKRSLEPD  240
ENTNANASDT LNNNPYSTNH DTQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221742311875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-170AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157626.10.0hypothetical protein PHAVU_002G085400g
SwissprotQ9LXG03e-53ZHD8_ARATH; Zinc-finger homeodomain protein 8
SwissprotQ9SEZ11e-53ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLV7CJZ10.0V7CJZ1_PHAVU; Uncharacterized protein
STRINGGLYMA01G05810.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.19e-51homeobox protein 30